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BMCBI
2007
106views more  BMCBI 2007»
13 years 11 months ago
Simultaneous identification of long similar substrings in large sets of sequences
Background: Sequence comparison faces new challenges today, with many complete genomes and large libraries of transcripts known. Gene annotation pipelines match these sequences in...
Jürgen Kleffe, Friedrich Möller, Burghar...
BMCBI
2005
292views more  BMCBI 2005»
13 years 11 months ago
Atlas - a data warehouse for integrative bioinformatics
Background: We present a biological data warehouse called Atlas that locally stores and integrates biological sequences, molecular interactions, homology information, functional a...
Sohrab P. Shah, Yong Huang, Tao Xu, Macaire M. S. ...
BMCBI
2004
200views more  BMCBI 2004»
13 years 11 months ago
ABC: software for interactive browsing of genomic multiple sequence alignment data
Background: Alignment and comparison of related genome sequences is a powerful method to identify regions likely to contain functional elements. Such analyses are data intensive, ...
Gregory M. Cooper, Senthil A. G. Singaravelu, Aren...
HICSS
2011
IEEE
157views Biometrics» more  HICSS 2011»
13 years 2 months ago
Reusing Relational Queries for Intuitive Decision Optimization
— Decision optimization is used in many applications such as those for finding the best course of action in emergencies. However, optimization solutions require considerable mat...
Alexander Brodsky, Nathan E. Egge, Xiaoyang Sean W...
ICSE
2008
IEEE-ACM
14 years 12 months ago
Granularity in software product lines
Building software product lines (SPLs) with features is a challenging task. Many SPL implementations support features with coarse granularity ? e.g., the ability to add and wrap e...
Christian Kästner, Martin Kuhlemann, Sven Ape...