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» Interaction Models for Biochemical Reactions
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UPP
2004
Springer
14 years 1 months ago
Higher-Order Chemical Programming Style
The chemical reaction metaphor describes computation in terms of a chemical solution in which molecules interact freely according to reaction rules. Chemical solutions are represen...
Jean-Pierre Banâtre, Pascal Fradet, Yann Rad...
CDC
2009
IEEE
124views Control Systems» more  CDC 2009»
14 years 13 days ago
Design of insulating devices for in vitro synthetic circuits
— This paper describes a synthetic in vitro genetic circuit programmed to work as an insulating device. This circuit is composed of nucleic acids, which can be designed to intera...
Elisa Franco, Domitilla Del Vecchio, Richard M. Mu...
CDC
2010
IEEE
161views Control Systems» more  CDC 2010»
13 years 2 months ago
Circadian system modeling and phase control
Circadian rhythms are biological processes found in all living organisms, from plants to insects to mammals that repeat with a period close to, but not exactly, 24 hours. In the ab...
Jiaxiang Zhang, Andrew Bierman, John T. Wen, Agung...
ICTAI
2008
IEEE
14 years 2 months ago
The System BioC for Reasoning about Biological Models in Action Language C
We elaborate upon the usage of action language C for representing and reasoning about biological models. First, we provide a simple extension of C allowing for variables and show ...
Steve Dworschak, Torsten Grote, Arne König, T...
BMCBI
2011
13 years 2 months ago
Properties of Metabolic Graphs: Biological Organization or Representation Artifacts?
Background: Standard graphs, where each edge links two nodes, have been extensively used to represent the connectivity of metabolic networks. It is based on this representation th...
Wanding Zhou, Luay Nakhleh