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BMCBI
2008
118views more  BMCBI 2008»
13 years 7 months ago
Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution
Background: The detection of conserved motifs in promoters of orthologous genes (phylogenetic footprints) has become a common strategy to predict cis-acting regulatory elements. S...
Rekin's Janky, Jacques van Helden
STTT
2008
103views more  STTT 2008»
13 years 7 months ago
Model-based development of a course of action scheduling tool
Abstract. This paper shows how a formal method in the form of Coloured Petri Nets (CPNs) and the supporting CPN Tools have been used in the development of the Course of Action Sche...
Lars Michael Kristensen, Peter Mechlenborg, Lin Zh...
BMCBI
2008
98views more  BMCBI 2008»
13 years 7 months ago
Assessing probe-specific dye and slide biases in two-color microarray data
Background: A primary reason for using two-color microarrays is that the use of two samples labeled with different dyes on the same slide, that bind to probes on the same spot, is...
Ruixiao Lu, Geun-Cheol Lee, Michael Shultz, Chris ...
BMCBI
2004
144views more  BMCBI 2004»
13 years 7 months ago
PASBio: predicate-argument structures for event extraction in molecular biology
Background: The exploitation of information extraction (IE), a technology aiming to provide instances of structured representations from free-form text, has been rapidly growing w...
Tuangthong Wattarujeekrit, Parantu K. Shah, Nigel ...
OOPSLA
2007
Springer
14 years 1 months ago
DigitalAssets discoverer: automatic identification of reusable software components
DigitalAssets Discoverer is a tool that implements a group of indicators for automatic identification of software components that can be reused in the development of new applicati...
Eduardo Machado Gonçalves, Marcilio Silva O...