PASBio: predicate-argument structures for event extraction in molecular biology

Background: The exploitation of information extraction (IE), a technology aiming to provide instances of structured representations from free-form text, has been rapidly growing within the molecular biology (MB) research community to keep track of the latest results reported in literature. IE systems have traditionally used shallow syntactic patterns for matching facts in sentences but such approaches appear inadequate to achieve high accuracy in MB event extraction due to complex sentence structure. A consensus in the IE community is emerging on the necessity for exploiting deeper knowledge structures such as through the relations between a verb and its arguments shown by predicate-argument structure (PAS). PAS is of interest as structures typically correspond to events of interest and their participating entities. For this to be realized within IE a key knowledge component is the definition of PAS frames. PAS frames for non-technical domains such as newswire are already being constr...

• Type: Journal
• Year: 2004
• Where: BMCBI
• Authors: Tuangthong Wattarujeekrit, Parantu K. Shah, Nigel Collier
• Keywords: BMCBI 2004, Complex Sentence Structure, MB Domain, PAS Frames