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IJBRA
2008
97views more  IJBRA 2008»
13 years 7 months ago
Extracting Protein-Protein Interactions from MEDLINE using the Hidden Vector State model
: A major challenge in text mining for biomedicine is automatically extracting protein-protein interactions from the vast amount of biomedical literature. We have constructed an in...
Deyu Zhou, Yulan He, Chee Keong Kwoh
BIBM
2009
IEEE
151views Bioinformatics» more  BIBM 2009»
14 years 2 months ago
Detection of Gene Orthology Based on Protein-Protein Interaction Networks
Abstract—Ortholog detection methods present a powerful approach for finding genes that participate in similar biological processes across different organisms, extending our unde...
Fadi Towfic, M. Heather West Greenlee, Vasant Hona...
RSCTC
2004
Springer
150views Fuzzy Logic» more  RSCTC 2004»
14 years 1 months ago
Extracting Protein-Protein Interaction Sentences by Applying Rough Set Data Analysis
illion abstracts. Problem. How to find sentences that talk about protein-protein interactions? Example (Non-Interaction Sentence) All our data are consistent with models in which ...
Filip Ginter, Tapio Pahikkala, Sampo Pyysalo, Jorm...
BMCBI
2007
107views more  BMCBI 2007»
13 years 7 months ago
Reuse of structural domain-domain interactions in protein networks
Background: Protein interactions are thought to be largely mediated by interactions between structural domains. Databases such as iPfam relate interactions in protein structures t...
Benjamin Schuster-Böckler, Alex Bateman
IJDMB
2007
114views more  IJDMB 2007»
13 years 7 months ago
A parallel edge-betweenness clustering tool for Protein-Protein Interaction networks
: The increasing availability of protein-protein interaction graphs (PPI) requires new efficient tools capable of extracting valuable biological knowledge from these networks. Amon...
Qiaofeng Yang, Stefano Lonardi