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IJBRA
2007
88views more  IJBRA 2007»
13 years 7 months ago
Finding molecular complexes through multiple layer clustering of protein interaction networks
: Clustering protein-protein interaction networks (PINs) helps to identify complexes that guide the cell machinery. Clustering algorithms often create a flat clustering, without co...
Bill Andreopoulos, Aijun An, Xiangji Huang, Xiaoga...
BIOINFORMATICS
2006
124views more  BIOINFORMATICS 2006»
13 years 7 months ago
Helix Interaction Tool (HIT): a web-based tool for analysis of helix-helix interactions in proteins
Motivation: In many proteins, helix-helix interactions can be critical to establishing protein conformation (folding) and dynamics, as well as determining associations between pro...
Anne E. Counterman Burba, Ursula Lehnert, Eric Z. ...
NAR
2006
71views more  NAR 2006»
13 years 7 months ago
TSEMA: interactive prediction of protein pairings between interacting families
An entire family of methodologies for predicting protein interactions is based on the observed fact that families of interacting proteins tend to have similar phylogenetic trees d...
José M. G. Izarzugaza, David de Juan, Carle...
CSB
2005
IEEE
118views Bioinformatics» more  CSB 2005»
14 years 1 months ago
A Protein Interaction Verification System Based on a Neural Network Algorithm
Large amounts of protein-protein interaction data have been identified using various genome-scale screening techniques. Although interaction data is a valuable resource, high-thro...
Min Su Lee, Seung-Soo Park, Min Kyung Kim
BMCBI
2006
147views more  BMCBI 2006»
13 years 7 months ago
QPath: a method for querying pathways in a protein-protein interaction network
Background: Sequence comparison is one of the most prominent tools in biological research, and is instrumental in studying gene function and evolution. The rapid development of hi...
Tomer Shlomi, Daniel Segal, Eytan Ruppin, Roded Sh...