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SIGSOFT
2007
ACM
14 years 9 months ago
Mining API patterns as partial orders from source code: from usage scenarios to specifications
A software system interacts with third-party libraries through various APIs. Using these library APIs often needs to follow certain usage patterns. Furthermore, ordering rules (sp...
Mithun Acharya, Tao Xie, Jian Pei, Jun Xu
BMCBI
2007
114views more  BMCBI 2007»
13 years 9 months ago
Mining and state-space modeling and verification of sub-networks from large-scale biomolecular networks
Background: Biomolecular networks dynamically respond to stimuli and implement cellular function. Understanding these dynamic changes is the key challenge for cell biologists. As ...
Xiaohua Hu, Fang-Xiang Wu
BMCBI
2006
169views more  BMCBI 2006»
13 years 8 months ago
Finding biological process modifications in cancer tissues by mining gene expression correlations
Background: Through the use of DNA microarrays it is now possible to obtain quantitative measurements of the expression of thousands of genes from a biological sample. This techno...
Giacomo Gamberoni, Sergio Storari, Stefano Volinia
BMCBI
2005
251views more  BMCBI 2005»
13 years 8 months ago
Contextual weighting for Support Vector Machines in literature mining: an application to gene versus protein name disambiguation
Background: The ability to distinguish between genes and proteins is essential for understanding biological text. Support Vector Machines (SVMs) have been proven to be very effici...
Tapio Pahikkala, Filip Ginter, Jorma Boberg, Jouni...
BMCBI
2005
134views more  BMCBI 2005»
13 years 8 months ago
Inherited disorder phenotypes: controlled annotation and statistical analysis for knowledge mining from gene lists
Background: Analysis of inherited diseases and their associated phenotypes is of great importance to gain knowledge of underlying genetic interactions and could ultimately give cl...
Marco Masseroli, Osvaldo Galati, Mauro Manzotti, K...