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BMCBI
2010
129views more  BMCBI 2010»
13 years 8 months ago
The LabelHash Algorithm for Substructure Matching
Background: There is an increasing number of proteins with known structure but unknown function. Determining their function would have a significant impact on understanding diseas...
Mark Moll, Drew H. Bryant, Lydia E. Kavraki
SIGARCH
2008
107views more  SIGARCH 2008»
13 years 8 months ago
A lightweight streaming layer for multicore execution
As multicore architectures gain widespread use, it becomes increasingly important to be able to harness their additional processing power to achieve higher performance. However, e...
David Zhang, Qiuyuan J. Li, Rodric Rabbah, Saman A...
TCAD
2008
127views more  TCAD 2008»
13 years 8 months ago
Speculative Loop-Pipelining in Binary Translation for Hardware Acceleration
Abstract--Multimedia and DSP applications have several computationally intensive kernels which are often offloaded and accelerated by application-specific hardware. This paper pres...
Sejong Oh, Tag Gon Kim, Jeonghun Cho, Elaheh Bozor...
BMCBI
2004
150views more  BMCBI 2004»
13 years 8 months ago
SS-Wrapper: a package of wrapper applications for similarity searches on Linux clusters
Background: Large-scale sequence comparison is a powerful tool for biological inference in modern molecular biology. Comparing new sequences to those in annotated databases is a u...
Chunlin Wang, Elliot J. Lefkowitz
ICS
2003
Tsinghua U.
14 years 1 months ago
Estimating cache misses and locality using stack distances
Cache behavior modeling is an important part of modern optimizing compilers. In this paper we present a method to estimate the number of cache misses, at compile time, using a mac...
Calin Cascaval, David A. Padua