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    BMCBI
    2006
    113views more  BMCBI 2006»
    QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyp
    13 years 9 months ago
    QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyp
    Download  www.biomedcentral.com
    Background: Single nucleotide polymorphisms (SNPs) are important tools in studying complex genetic traits and genome evolution. Computational strategies for SNP discovery make use...
    Jifeng Tang, Ben Vosman, Roeland E. Voorrips, C. G...
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    POPL
    2009
    ACM
    123views Programming Languages» more  POPL 2009»
    Modular code generation from synchronous block diagrams: modularity vs. code size
    14 years 9 months ago
    Modular code generation from synchronous block diagrams: modularity vs. code size
    Download  www.cse.psu.edu
    We study modular, automatic code generation from hierarchical block diagrams with synchronous semantics. Such diagrams are the fundamental model behind widespread tools in the emb...
    Roberto Lublinerman, Christian Szegedy, Stavros Tr...
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    JIB
    2008
    76views more  JIB 2008»
    WebStruct and VisualStruct: web interfaces and visualization for Structure software implemented in a cluster environment
    13 years 8 months ago
    WebStruct and VisualStruct: web interfaces and visualization for Structure software implemented in a cluster environment
    Download  journal.imbio.de
    Structure, is a widely used software tool to investigate population genetic structure with multi-locus genotyping data. The software uses an iterative algorithm to group individua...
    B. Jayashree, S. Rajgopal, David A. Hoisington, V....
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    BMCBI
    2011
    215views Artificial Intelligence» more  BMCBI 2011»
    ENGINES: exploring single nucleotide variation in entire human genomes
    13 years 13 days ago
    ENGINES: exploring single nucleotide variation in entire human genomes
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    Background: Next generation ultra-sequencing technologies are starting to produce extensive quantities of data from entire human genome or exome sequences, and therefore new softw...
    Jorge Amigo, Antonio Salas, Christopher Phillips
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    BMCBI
    2007
    88views more  BMCBI 2007»
    Use of DNA melting simulation software for in silico diagnostic assay design: targeting regions with complex melting curves and
    13 years 9 months ago
    Use of DNA melting simulation software for in silico diagnostic assay design: targeting regions with complex melting curves and
    Download  www.biomedcentral.com
    Background: DNA melting curve analysis using double-stranded DNA-specific dyes such as SYTO9 produce complex and reproducible melting profiles, resulting in the detection of multi...
    John P. Rasmussen, Christopher P. Saint, Paul T. M...
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