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BMCBI
2010
147views more  BMCBI 2010»
13 years 9 months ago
Automatic detection of anchor points for multiple sequence alignment
Background: Determining beforehand specific positions to align (anchor points) has proved valuable for the accuracy of automated multiple sequence alignment (MSA) software. This f...
Florian Pitschi, Claudine Devauchelle, Eduardo Cor...
BMCBI
2007
181views more  BMCBI 2007»
13 years 9 months ago
Genes2Networks: connecting lists of gene symbols using mammalian protein interactions databases
Background: In recent years, mammalian protein-protein interaction network databases have been developed. The interactions in these databases are either extracted manually from lo...
Seth I. Berger, Jeremy M. Posner, Avi Ma'ayan
BMCBI
2010
145views more  BMCBI 2010»
13 years 9 months ago
Clustering metagenomic sequences with interpolated Markov models
Background: Sequencing of environmental DNA (often called metagenomics) has shown tremendous potential to uncover the vast number of unknown microbes that cannot be cultured and s...
David R. Kelley, Steven L. Salzberg
BMCBI
2008
118views more  BMCBI 2008»
13 years 9 months ago
PseudoGeneQuest - Service for identification of different pseudogene types in the human genome
Background: Pseudogenes, nonfunctional copies of genes, evolve fast due the lack of evolutionary pressures and thus appear in several different forms. PseudoGeneQuest is an online...
Csaba P. Ortutay, Mauno Vihinen
CORR
2008
Springer
150views Education» more  CORR 2008»
13 years 9 months ago
Message-passing for Maximum Weight Independent Set
Abstract--In this paper, we investigate the use of messagepassing algorithms for the problem of finding the max-weight independent set (MWIS) in a graph. First, we study the perfor...
Sujay Sanghavi, Devavrat Shah, Alan S. Willsky