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BMCBI
2005
156views more  BMCBI 2005»
15 years 3 months ago
DynGO: a tool for visualizing and mining of Gene Ontology and its associations
Background: A large volume of data and information about genes and gene products has been stored in various molecular biology databases. A major challenge for knowledge discovery ...
Hongfang Liu, Zhang-Zhi Hu, Cathy H. Wu
BMCBI
2010
183views more  BMCBI 2010»
15 years 3 months ago
SING: Subgraph search In Non-homogeneous Graphs
Background: Finding the subgraphs of a graph database that are isomorphic to a given query graph has practical applications in several fields, from cheminformatics to image unders...
Raffaele Di Natale, Alfredo Ferro, Rosalba Giugno,...
BMCBI
2008
123views more  BMCBI 2008»
15 years 3 months ago
Shape based indexing for faster search of RNA family databases
Background: Most non-coding RNA families exert their function by means of a conserved, common secondary structure. The Rfam data base contains more than five hundred structurally ...
Stefan Janssen, Jens Reeder, Robert Giegerich
LREC
2008
101views Education» more  LREC 2008»
15 years 4 months ago
Glossa: a Multilingual, Multimodal, Configurable User Interface
We describe a web-based corpus query system, Glossa, which combines the expressiveness of regular query languages with the user-friendliness of a graphical interface. Since corpus...
Lars Nygaard, Joel Priestley, Anders Nøkles...
BMCBI
2008
75views more  BMCBI 2008»
15 years 3 months ago
Re-searcher: a system for recurrent detection of homologous protein sequences
Background: Sequence searches are routinely employed to detect and annotate related proteins. However, a rapid growth of databases necessitates a frequent repetition of sequence s...
Valdemaras Repsys, Mindaugas Margelevicius, Ceslov...