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JBI
2006
13 years 7 months ago
What's in a character?
Systematic analyses are included as integral parts of bioinformatic analysis. The use of phenetic and phylogenetic trees in many of the newer areas of biology create a need for bi...
Robert DeSalle
BMCBI
2006
112views more  BMCBI 2006»
13 years 7 months ago
Phylophenetic properties of metabolic pathway topologies as revealed by global analysis
Background: As phenotypic features derived from heritable characters, the topologies of metabolic pathways contain both phylogenetic and phenetic components. In the post-genomic e...
Yong Zhang, Shaojuan Li, Geir Skogerbø, Zhi...
JAR
2007
72views more  JAR 2007»
13 years 7 months ago
Inferring Phylogenetic Trees Using Answer Set Programming
We describe the reconstruction of a phylogeny for a set of taxa, with a character-based cladistics approach, in a declarative knowledge representation formalism, and show how to u...
Daniel R. Brooks, Esra Erdem, Selim T. Erdogan, Ja...
BMCBI
2007
131views more  BMCBI 2007»
13 years 7 months ago
An improved method for identifying functionally linked proteins using phylogenetic profiles
Background: Phylogenetic profiles record the occurrence of homologs of genes across fully sequenced organisms. Proteins with similar profiles are typically components of protein c...
Shawn Cokus, Sayaka Mizutani, Matteo Pellegrini
HICSS
2007
IEEE
187views Biometrics» more  HICSS 2007»
14 years 1 months ago
A Service-Oriented Data Integration and Analysis Environment for In Silico Experiments and Bioinformatics Research
In this paper, we present a practical experiment of building a service-oriented system upon current web services technologies and bioinformatics middleware. The system allows scie...
Xiaorong Xiang, Gregory R. Madey, Jeanne Romero-Se...