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BMCBI
2011
13 years 3 months ago
Support vector machines-based identification of alternative splicing in Arabidopsis thaliana from whole-genome tiling arrays
Background: Alternative splicing (AS) is a process which generates several distinct mRNA isoforms from the same gene by splicing different portions out of the precursor transcript...
Johannes Eichner, Georg Zeller, Sascha Laubinger, ...
KDD
2008
ACM
206views Data Mining» more  KDD 2008»
14 years 9 months ago
Identifying biologically relevant genes via multiple heterogeneous data sources
Selection of genes that are differentially expressed and critical to a particular biological process has been a major challenge in post-array analysis. Recent development in bioin...
Zheng Zhao, Jiangxin Wang, Huan Liu, Jieping Ye, Y...
DOCENG
2009
ACM
14 years 3 months ago
Annotations with EARMARK for arbitrary, overlapping and out-of order markup
In this paper we propose a novel approach to markup, called Extreme Annotational RDF Markup (EARMARK), using RDF and OWL to annotate features in text content that cannot be mapped...
Silvio Peroni, Fabio Vitali
BMCBI
2008
156views more  BMCBI 2008»
13 years 8 months ago
ArrayWiki: an enabling technology for sharing public microarray data repositories and meta-analyses
Background: A survey of microarray databases reveals that most of the repository contents and data models are heterogeneous (i.e., data obtained from different chip manufacturers)...
Todd H. Stokes, J. T. Torrance, Henry Li, May D. W...
BMCBI
2011
13 years 4 days ago
Linear and non-linear dependencies between copy number aberrations and mRNA expression reveal distinct molecular pathways in Bre
Background: Elucidating the exact relationship between gene copy number and expression would enable identification of regulatory mechanisms of abnormal gene expression and biologi...
Hiroko K. Solvang, Ole Christian Lingjærde, ...