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BMCBI
2006
78views more  BMCBI 2006»
13 years 10 months ago
Subfamily logos: visualization of sequence deviations at alignment positions with high information content
Background: Recognition of relevant sequence deviations can be valuable for elucidating functional differences between protein subfamilies. Interesting residues at highly conserve...
Eric Beitz
BMCBI
2006
115views more  BMCBI 2006»
13 years 10 months ago
The accuracy of several multiple sequence alignment programs for proteins
Background: There have been many algorithms and software programs implemented for the inference of multiple sequence alignments of protein and DNA sequences. The "true" ...
Paulo A. S. Nuin, Zhouzhi Wang, Elisabeth R. M. Ti...
BMCBI
2006
124views more  BMCBI 2006»
13 years 10 months ago
The development and validation of the Virtual Tissue Matrix, a software application that facilitates the review of tissue microa
Background: The Tissue Microarray (TMA) facilitates high-throughput analysis of hundreds of tissue specimens simultaneously. However, bottlenecks in the storage and manipulation o...
Catherine M. Conway, Deirdre O'Shea, Sallyann O'Br...
BMCBI
2006
127views more  BMCBI 2006»
13 years 10 months ago
Using local gene expression similarities to discover regulatory binding site modules
Background: We present an approach designed to identify gene regulation patterns using sequence and expression data collected for Saccharomyces cerevisae. Our main goal is to rela...
Bartek Wilczynski, Torgeir R. Hvidsten, Andriy Kry...
CONSTRAINTS
2006
77views more  CONSTRAINTS 2006»
13 years 10 months ago
The Impact of Search Heuristics on Heavy-Tailed Behaviour
Abstract. The heavy-tailed phenomenon that characterises the runtime distributions of backtrack search procedures has received considerable attention over the past few years. Some ...
Tudor Hulubei, Barry O'Sullivan
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