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» Large Scale Simulation of Parallel Molecular Dynamics
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SENSYS
2004
ACM
14 years 2 months ago
The dynamic behavior of a data dissemination protocol for network programming at scale
To support network programming, we present Deluge, a reliable data dissemination protocol for propagating large data objects from one or more source nodes to many other nodes over...
Jonathan W. Hui, David E. Culler
ICPP
2000
IEEE
14 years 1 months ago
Runtime Parallel Incremental Scheduling of DAGs
A runtime parallel incremental DAG scheduling approach is described in this paper. A DAG is expanded incrementally, scheduled, and executed on a parallel machine. A DAG scheduling...
Min-You Wu, Wei Shu, Yong Chen
TCBB
2011
13 years 4 months ago
Semi-Markov Models for Brownian Dynamics Permeation in Biological Ion Channels
—Constructing accurate computational models that explain how ions permeate through a biological ion channel is an important problem in biophysics and drug design. Brownian dynami...
Vikram Krishnamurthy, Kai Yiu Luk
HIPC
2009
Springer
13 years 7 months ago
Fast checkpointing by Write Aggregation with Dynamic Buffer and Interleaving on multicore architecture
Large scale compute clusters continue to grow to ever-increasing proportions. However, as clusters and applications continue to grow, the Mean Time Between Failures (MTBF) has redu...
Xiangyong Ouyang, Karthik Gopalakrishnan, Tejus Ga...
VR
2002
IEEE
174views Virtual Reality» more  VR 2002»
13 years 8 months ago
Immersive and Interactive Exploration of Billion-Atom Systems
We have developed a visualization system, named Atomsviewer, to render a billion atoms from the results of a molecular dynamics simulation. This system uses a hierarchical view fr...
Ashish Sharma, Xinlian Liu, Paul Miller, Aiichiro ...