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» Large Scale Simulation of Parallel Molecular Dynamics
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DCOSS
2006
Springer
13 years 11 months ago
Efficient and Robust Data Dissemination Using Limited Extra Network Knowledge
We propose a new data dissemination protocol for wireless sensor networks, that basically pulls some additional knowledge about the network in order to subsequently improve data fo...
Ioannis Chatzigiannakis, Athanasios Kinalis, Sotir...
ICCS
2001
Springer
14 years 11 days ago
High-Performance Algorithm Engineering for Computational Phylogenetics
Abstract. Phylogeny reconstruction from molecular data poses complex optimization problems: almost all optimization models are NP-hard and thus computationally intractable. Yet app...
Bernard M. E. Moret, David A. Bader, Tandy Warnow
CMSB
2008
Springer
13 years 9 months ago
Automatic Complexity Analysis and Model Reduction of Nonlinear Biochemical Systems
Kinetic models for biochemical systems often comprise a large amount of coupled differential equations with species concentrations varying on different time scales. In this paper w...
Dirk Lebiedz, Dominik Skanda, Marc Fein
ISBI
2008
IEEE
14 years 8 months ago
Invariant 3D spharm features for characterizing fMRI activations in ROIs while minimizing effects of intersubject anatomical var
Spatial patterns of activation statistics within anatomically-defined regions of interest (ROIs) in functional magnetic resonance imaging (fMRI) data were recently shown to be sen...
Ashish Uthama, Rafeef Abugharbieh, Samantha J. Pal...
ISCA
2012
IEEE
280views Hardware» more  ISCA 2012»
11 years 10 months ago
A case for random shortcut topologies for HPC interconnects
—As the scales of parallel applications and platforms increase the negative impact of communication latencies on performance becomes large. Fortunately, modern High Performance C...
Michihiro Koibuchi, Hiroki Matsutani, Hideharu Ama...