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ICPPW
2009
IEEE
15 years 2 days ago
A Scalable Parallel Approach for Peptide Identification from Large-Scale Mass Spectrometry Data
Identifying peptides, which are short polymeric chains of amino acid residues in a protein sequence, is of fundamental importance in systems biology research. The most popular appr...
Gaurav Ramesh Kulkarni, Ananth Kalyanaraman, Willi...
CLUSTER
2003
IEEE
15 years 7 months ago
Application-Bypass Reduction for Large-Scale Clusters
Process skew is an important factor in the performance of parallel applications, especially in large-scale clusters. Reduction is a common collective operation which, by its natur...
Adam Wagner, Darius Buntinas, Dhabaleswar K. Panda...
176
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BMCBI
2007
265views more  BMCBI 2007»
15 years 2 months ago
Large scale clustering of protein sequences with FORCE -A layout based heuristic for weighted cluster editing
Background: Detecting groups of functionally related proteins from their amino acid sequence alone has been a long-standing challenge in computational genome research. Several clu...
Tobias Wittkop, Jan Baumbach, Francisco P. Lobo, S...
EUROPAR
2006
Springer
15 years 6 months ago
Parallel Solution of Large-Scale and Sparse Generalized Algebraic Riccati Equations
We discuss a parallel algorithm for the solution of large-scale generalized algebraic Riccati equations with dimension up to O(105 ). We survey the numerical algorithms underlying ...
José M. Badía, Peter Benner, Rafael ...
JSSPP
2004
Springer
15 years 7 months ago
Performance Implications of Failures in Large-Scale Cluster Scheduling
As we continue to evolve into large-scale parallel systems, many of them employing hundreds of computing engines to take on mission-critical roles, it is crucial to design those s...
Yanyong Zhang, Mark S. Squillante, Anand Sivasubra...