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BMCBI
2011
13 years 5 months ago
Motif-guided sparse decomposition of gene expression data for regulatory module identification
Background: Genes work coordinately as gene modules or gene networks. Various computational approaches have been proposed to find gene modules based on gene expression data; for e...
Ting Gong, Jianhua Xuan, Li Chen, Rebecca B. Riggi...
BMCBI
2010
118views more  BMCBI 2010»
13 years 10 months ago
svdPPCS: an effective singular value decomposition-based method for conserved and divergent co-expression gene module identifica
Background: Comparative analysis of gene expression profiling of multiple biological categories, such as different species of organisms or different kinds of tissue, promises to e...
Wensheng Zhang, Andrea Edwards, Wei Fan, Dongxiao ...
CORR
2011
Springer
168views Education» more  CORR 2011»
13 years 1 months ago
Robustness and modular structure in networks
Many complex systems, from power grids and the internet, to the brain and society, can be modeled using modular networks. Modules, densely interconnected groups of elements, often...
James P. Bagrow, Sune Lehmann, Yong-Yeol Ahn
BMCBI
2004
150views more  BMCBI 2004»
13 years 10 months ago
Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila
Background: The discovery of cis-regulatory modules in metazoan genomes is crucial for understanding the connection between genes and organism diversity. It is important to quanti...
Saurabh Sinha, Mark D. Schroeder, Ulrich Unnerstal...
FLAIRS
2007
14 years 14 days ago
Guiding Inference with Policy Search Reinforcement Learning
Symbolic reasoning is a well understood and effective approach to handling reasoning over formally represented knowledge; however, simple symbolic inference systems necessarily sl...
Matthew E. Taylor, Cynthia Matuszek, Pace Reagan S...