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ALMOB
2006
138views more  ALMOB 2006»
13 years 10 months ago
A combinatorial optimization approach for diverse motif finding applications
Background: Discovering approximately repeated patterns, or motifs, in biological sequences is an important and widely-studied problem in computational molecular biology. Most fre...
Elena Zaslavsky, Mona Singh
DCG
2006
110views more  DCG 2006»
13 years 9 months ago
High-Dimensional Centrally Symmetric Polytopes with Neighborliness Proportional to Dimension
Let A be a d by n matrix, d < n. Let C be the regular cross polytope (octahedron) in Rn . It has recently been shown that properties of the centrosymmetric polytope P = AC are ...
David L. Donoho
BMCBI
2004
104views more  BMCBI 2004»
13 years 9 months ago
Discriminative topological features reveal biological network mechanisms
Background: Recent genomic and bioinformatic advances have motivated the development of numerous network models intending to describe graphs of biological, technological, and soci...
Manuel Middendorf, Etay Ziv, Carter Adams, Jen Hom...
JAT
2010
109views more  JAT 2010»
13 years 8 months ago
Networks of polynomial pieces with application to the analysis of point clouds and images
We consider H¨older smoothness classes of surfaces for which we construct piecewise polynomial approximation networks, which are graphs with polynomial pieces as nodes and edges ...
Ery Arias-Castro, Boris Efros, Ofer Levi
ASPDAC
2010
ACM
637views Hardware» more  ASPDAC 2010»
13 years 7 months ago
A new graph-theoretic, multi-objective layout decomposition framework for double patterning lithography
As Double Patterning Lithography(DPL) becomes the leading candidate for sub-30nm lithography process, we need a fast and lithography friendly decomposition framework. In this pape...
Jae-Seok Yang, Katrina Lu, Minsik Cho, Kun Yuan, D...