Background: At intermediate stages of genome assembly projects, when a number of contigs have been generated and their validity needs to be verified, it is desirable to align thes...
In distributed combinatorial optimization problems, dynamic programming algorithms like DPOP ([Petcu and Faltings, 2005]) require only a linear number of messages, thus generating...
The memory subsystem accounts for a significant portion of the aggregate energy budget of contemporary embedded systems. Moreover, there exists a large potential for optimizing th...
We address the problem of approximate string matching in two dimensions, that is, to nd a pattern of size m m in a text of size n n with at most k errors (substitutions, insertions...
This paper reports on steps that have been taken to enhance previously presented evolutionary sound matching work. In doing so, the convergence characteristics are shown to provide...