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WABI
2001
Springer
142views Bioinformatics» more  WABI 2001»
14 years 8 days ago
Pattern Matching and Pattern Discovery Algorithms for Protein Topologies
We describe algorithms for pattern matching and pattern learning in TOPS diagrams (formal descriptions of protein topologies). These problems can be reduced to checking for subgrap...
Juris Viksna, David Gilbert
IPPS
2006
IEEE
14 years 1 months ago
Implementation of a programmable array processor architecture for approximate string matching algorithms on FPGAs
Approximate string matching problem is a common and often repeated task in information retrieval and bioinformatics. This paper proposes a generic design of a programmable array p...
Panagiotis D. Michailidis, Konstantinos G. Margari...
ISSAC
2005
Springer
115views Mathematics» more  ISSAC 2005»
14 years 1 months ago
Algorithms for the non-monic case of the sparse modular GCD algorithm
Let G = (4y2 + 2z)x2 + (10y2 + 6z) be the greatest common divisor (gcd) of two polynomials A, B ∈   [x,y, z]. Because G is not monic in the main variable x, the sparse modular ...
Jennifer de Kleine, Michael B. Monagan, Allan D. W...
AINA
2010
IEEE
14 years 28 days ago
Mobile Element Path Planning for Time-Constrained Data Gathering in Wireless Sensor Networks
— We consider the problem of gathering data from a sensor network using mobile elements. In particular, we consider the case where the data are produced by measurements and need ...
Khaled Almiani, Anastasios Viglas, Lavy Libman
KDD
2006
ACM
213views Data Mining» more  KDD 2006»
14 years 8 months ago
Learning sparse metrics via linear programming
Calculation of object similarity, for example through a distance function, is a common part of data mining and machine learning algorithms. This calculation is crucial for efficie...
Glenn Fung, Rómer Rosales