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ICPP
2006
IEEE
14 years 2 months ago
A Parallel, Out-of-Core Algorithm for RNA Secondary Structure Prediction
RNA pseudoknot prediction is an algorithm for RNA sequence search and alignment. An important building block towards pseudoknot prediction is RNA secondary structure prediction. T...
Wenduo Zhou, David K. Lowenthal
SPAA
2003
ACM
14 years 1 months ago
Asynchronous parallel disk sorting
We develop an algorithm for parallel disk sorting, whose I/O cost approaches the lower bound and that guarantees almost perfect overlap between I/O and computation. Previous algor...
Roman Dementiev, Peter Sanders
SIAMSC
2011
140views more  SIAMSC 2011»
12 years 11 months ago
A Fast Parallel Algorithm for Selected Inversion of Structured Sparse Matrices with Application to 2D Electronic Structure Calcu
Abstract. An efficient parallel algorithm is presented and tested for computing selected components of H−1 where H has the structure of a Hamiltonian matrix of two-dimensional la...
Lin Lin, Chao Yang, Jianfeng Lu, Lexing Ying, Wein...
IEEEPACT
2005
IEEE
14 years 2 months ago
Communication Optimizations for Fine-Grained UPC Applications
Global address space languages like UPC exhibit high performance and portability on a broad class of shared and distributed memory parallel architectures. The most scalable applic...
Wei-Yu Chen, Costin Iancu, Katherine A. Yelick
SIGMOD
1997
ACM
134views Database» more  SIGMOD 1997»
14 years 23 days ago
Scalable Parallel Data Mining for Association Rules
One of the important problems in data mining is discovering association rules from databases of transactions where each transaction consists of a set of items. The most time consu...
Eui-Hong Han, George Karypis, Vipin Kumar