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SASP
2009
IEEE
291views Hardware» more  SASP 2009»
14 years 2 months ago
A parameterisable and scalable Smith-Waterman algorithm implementation on CUDA-compatible GPUs
—This paper describes a multi-threaded parallel design and implementation of the Smith-Waterman (SM) algorithm on compute unified device architecture (CUDA)-compatible graphic pr...
Cheng Ling, Khaled Benkrid, Tsuyoshi Hamada
BMCBI
2008
211views more  BMCBI 2008»
13 years 7 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle
LAWEB
2006
IEEE
14 years 1 months ago
OWeB: A Framework for Offline Web Browsing
Internet browsing is highly dependent on the real-time network availability and speed. This becomes a significant constraint when browsing over slow and intermittent networks. In ...
Ganesh Ananthanarayanan, Sean Olin Blagsvedt, Kent...
CSREASAM
2006
13 years 8 months ago
Reinforcing Access Control Using Fuzzy Relation Equations
Current computer security systems are based on the premise that once a user presents valid credentials to the authentication system (e.g. valid ID and password), they are granted ...
Ali Berrached, André de Korvin
ENTCS
2008
140views more  ENTCS 2008»
13 years 7 months ago
Higher-Order Separation Logic in Isabelle/HOLCF
We formalize higher-order separation logic for a first-order imperative language with procedures and local variables in Isabelle/HOLCF. The assertion language is modeled in such a...
Carsten Varming, Lars Birkedal