36 search results - page 4 / 8 » Local sequence alignments with monotonic gap penalties |
RECOMB
2006
Springer
14 years 8 months ago
2006
Springer
In this paper, we present CONTRAlign, an extensible and fully automatic framework for parameter learning and protein pairwise sequence alignment using pair conditional random field...
RECOMB
2006
Springer
14 years 8 months ago
2006
Springer
For as long as biologists have been computing alignments of sequences, the question of what values to use for scoring substitutions and gaps has persisted. While some choices for s...
ICIC
2009
Springer
14 years 2 months ago
2009
Springer
Sequence Alignment is a basic information disposal method in Bioinformatics. However, it is difficult to deal with multiple sequence alignment problem(MSA). In this paper, an impro...
BMCBI
2010
13 years 7 months ago
2010
Background: Sequence alignment is one of the most important techniques to analyze biological systems. It is also true that the alignment is not complete and we have to develop it ...
CP
2003
Springer
14 years 26 days ago
2003
Springer
Multiple sequence alignment is a central problem in Bioinformatics. A known integer programming approach is to apply branch-and-cut to exponentially large graph-theoretic models. T...