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» Locality and Gaps in RNA Comparison
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BMCBI
2004
146views more  BMCBI 2004»
13 years 7 months ago
The InDeVal insertion/deletion evaluation tool: a program for finding target regions in DNA sequences and for aiding in sequence
Background: The program InDeVal was originally developed to help researchers find known regions of insertion/deletion activity (with the exception of isolated single-base indels) ...
Sierra D. Stoneberg Holt, Jason A. Holt
RECOMB
2004
Springer
14 years 8 months ago
The Statistical Significance of Max-Gap Clusters
Identifying gene clusters, genomic regions that share local similarities in gene organization, is a prerequisite for many different types of genomic analyses, including operon pred...
Rose Hoberman, David Sankoff, Dannie Durand
ISCA
1999
IEEE
94views Hardware» more  ISCA 1999»
13 years 12 months ago
A Performance Comparison of Contemporary DRAM Architectures
In response to the growing gap between memory access time and processor speed, DRAM manufacturers have created several new DRAM architectures. This paper presents a simulation-bas...
Vinodh Cuppu, Bruce L. Jacob, Brian Davis, Trevor ...
ALMOB
2007
151views more  ALMOB 2007»
13 years 7 months ago
Local sequence alignments statistics: deviations from Gumbel statistics in the rare-event tail
Background: The optimal score for ungapped local alignments of infinitely long random sequences is known to follow a Gumbel extreme value distribution. Less is known about the imp...
Stefan Wolfsheimer, Bernd Burghardt, Alexander K. ...
MASCOTS
1998
13 years 9 months ago
Caches as Filters: A New Approach to Cache Analysis
As the processor-memory performance gap continues to grow, so does the need for effective tools and metrics to guide the design of efficient memory hierarchies to bridge that gap....
Dee A. B. Weikle, Sally A. McKee, William A. Wulf