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» Locating a Tree in a Phylogenetic Network in Quadratic Time
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BMCBI
2008
107views more  BMCBI 2008»
13 years 11 months ago
Extended Newick: it is time for a standard representation of phylogenetic networks
Background: Phylogenetic trees resulting from molecular phylogenetic analysis are available in Newick format from specialized databases but when it comes to phylogenetic networks,...
Gabriel Cardona, Francesc Rosselló, Gabriel...
BMCBI
2010
142views more  BMCBI 2010»
13 years 11 months ago
pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
Background: Likelihood-based phylogenetic inference is generally considered to be the most reliable classification method for unknown sequences. However, traditional likelihood-ba...
Frederick A. Matsen III, Robin B. Kodner, E. Virgi...
CPM
2009
Springer
137views Combinatorics» more  CPM 2009»
14 years 5 months ago
The Structure of Level-k Phylogenetic Networks
Evolution is usually described as a phylogenetic tree, but due to some exchange of genetic material, it can be represented as a phylogenetic network which has an underlying tree st...
Philippe Gambette, Vincent Berry, Christophe Paul
CORR
2008
Springer
89views Education» more  CORR 2008»
13 years 11 months ago
A Distance Metric for Tree-Sibling Time Consistent Phylogenetic Networks
Gabriel Cardona, Mercè Llabrés, Fran...
PR
2006
76views more  PR 2006»
13 years 10 months ago
A pattern recognition-based approach for phylogenetic network construction with constrained recombination
The tree representation of evolutionary relationship oversimplifies the view of the process of evolution as it cannot take into account the events such as horizontal gene transfer...
M. A. H. Zahid, Ankush Mittal, Ramesh Chandra Josh...