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» Logic-Based Modeling in Systems Biology
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ACS
2007
15 years 4 months ago
Directed Algebraic Topology, Categories and Higher Categories
Directed Algebraic Topology is a recent field, deeply linked with Category Theory. A ‘directed space’ has directed homotopies (generally non reversible), directed homology gro...
Marco Grandis
JLP
2008
123views more  JLP 2008»
15 years 4 months ago
Communicating by compatibility
A bio-inspired language is presented. Its terms are processes enclosed into boxes with typed interaction sites. The main feature of the formalism lays in the fact that the key-loc...
Davide Prandi, Corrado Priami, Paola Quaglia
JCNS
2006
59views more  JCNS 2006»
15 years 4 months ago
Spatio-temporal filtering properties of a dendritic cable with active spines: A modeling study in the spike-diffuse-spike framew
The spike-diffuse-spike (SDS) model describes a passive dendritic tree with active dendritic spines. Spine-head dynamics is modeled with a simple integrate-and-fire process, whils...
Yulia Timofeeva, Gabriel J. Lord, Stephen Coombes
JBI
2002
15 years 4 months ago
Revising regulatory networks: from expression data to linear causal models
Discovering the complex regulatory networks that govern mRNA expression is an important but difficult problem. Many current approaches use only expression data from microarrays to...
Stephen D. Bay, Jeff Shrager, Andrew Pohorille, Pa...
HYBRID
2007
Springer
15 years 10 months ago
Model Checking Genetic Regulatory Networks with Parameter Uncertainty
The lack of precise numerical information for the values of biological parameters severely limits the development and analysis of models of genetic regulatory networks. To deal wit...
Grégory Batt, Calin Belta, Ron Weiss