Directed Algebraic Topology is a recent field, deeply linked with Category Theory. A ‘directed space’ has directed homotopies (generally non reversible), directed homology gro...
A bio-inspired language is presented. Its terms are processes enclosed into boxes with typed interaction sites. The main feature of the formalism lays in the fact that the key-loc...
The spike-diffuse-spike (SDS) model describes a passive dendritic tree with active dendritic spines. Spine-head dynamics is modeled with a simple integrate-and-fire process, whils...
Discovering the complex regulatory networks that govern mRNA expression is an important but difficult problem. Many current approaches use only expression data from microarrays to...
Stephen D. Bay, Jeff Shrager, Andrew Pohorille, Pa...
The lack of precise numerical information for the values of biological parameters severely limits the development and analysis of models of genetic regulatory networks. To deal wit...