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» Logic-Based Modeling in Systems Biology
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148
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BMCBI
2006
123views more  BMCBI 2006»
15 years 4 months ago
SBEAMS-Microarray: database software supporting genomic expression analyses for systems biology
Background: The biological information in genomic expression data can be understood, and computationally extracted, in the context of systems of interacting molecules. The automat...
Bruz Marzolf, Eric W. Deutsch, Patrick Moss, David...
ENTCS
2007
96views more  ENTCS 2007»
15 years 4 months ago
Semantics of Biological Regulatory Networks
The aim of the paper is to revisit the model of Biological Regulatory Networks (BRN) which was proposed by René Thomas to model the interactions between a set of genes. We give a...
Gilles Bernot, Franck Cassez, Jean-Paul Comet, Fra...
LSGRID
2004
Springer
15 years 9 months ago
Distributed Cell Biology Simulations with E-Cell System
Many useful applications of simulation in computational cell biology, e.g. kinetic parameter estimation, Metabolic Control Analysis (MCA), and bifurcation analysis, require a large...
Masahiro Sugimoto, Kouichi Takahashi, Tomoya Kitay...
109
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IJON
2007
84views more  IJON 2007»
15 years 3 months ago
Modeling self-developing biological neural networks
Recent progress in chips–neuron interface suggests real biological neurons as long-term alternatives to silicon transistors. The first step ning such computing systems is to bu...
Hugues Berry, Olivier Temam
BIB
2007
139views more  BIB 2007»
15 years 4 months ago
Petri net modelling of biological networks
Mathematical modelling is increasingly used to get insights into the functioning of complex biological networks. In this context, Petri nets (PNs) have recently emerged as a promi...
Claudine Chaouiya