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» Logic-Based Modeling in Systems Biology
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FOCI
2007
IEEE
15 years 10 months ago
The Immune System in Pieces: Computational Lessons from Degeneracy in the Immune System
— The concept of degeneracy in biology, including the immune system, is well accepted and has been demonstrated to be present at many different levels. We explore this concept fr...
Miguel Mendao, Jonathan Timmis, Paul S. Andrews, M...
CORR
2008
Springer
113views Education» more  CORR 2008»
15 years 4 months ago
Self-Stabilizing Pulse Synchronization Inspired by Biological Pacemaker Networks
We define the "Pulse Synchronization" problem that requires nodes to achieve tight synchronization of regular pulse events, in the settings of distributed computing syste...
Ariel Daliot, Danny Dolev, Hanna Parnas
146
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BMCBI
2008
149views more  BMCBI 2008»
15 years 4 months ago
Evolution of biological sequences implies an extreme value distribution of type I for both global and local pairwise alignment s
Background: Confidence in pairwise alignments of biological sequences, obtained by various methods such as Blast or Smith-Waterman, is critical for automatic analyses of genomic d...
Olivier Bastien, Eric Maréchal
TCS
2011
14 years 11 months ago
An algorithmic framework for network reconstruction
Models of biological systems and phenomena are of high scientific interest and practical relevance, but not always easy to obtain due to their inherent complexity. To gain the re...
Markus Durzinsky, Annegret Wagler, Robert Weismant...
BMCBI
2011
14 years 10 months ago
Properties of Metabolic Graphs: Biological Organization or Representation Artifacts?
Background: Standard graphs, where each edge links two nodes, have been extensively used to represent the connectivity of metabolic networks. It is based on this representation th...
Wanding Zhou, Luay Nakhleh