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» Logic-Based Modeling in Systems Biology
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IWANN
2005
Springer
15 years 9 months ago
Modeling Neural Processes in Lindenmayer Systems
Computing in nature as is the case with the human brain is an emerging research area in theoretical computer science. The present paper’s aim is to explore biological neural cell...
Carlos Martín-Vide, Tseren-Onolt Ishdorj
FPGA
2004
ACM
174views FPGA» more  FPGA 2004»
15 years 9 months ago
A compiled accelerator for biological cell signaling simulations
The simulation of large systems of biochemical reactions is a key part of research into molecular signaling and information processing in biological cells. However, it can be impr...
John F. Keane, Christopher Bradley, Carl Ebeling
BCS
2008
15 years 5 months ago
Beatbox - A Computer Simulation Environment for Computational Biology of the Heart
Despite over a century's study, the trigger mechanisms of cardiac arrhythmias are poorly understood. Even modern experimental methods do not provide sufficient temporal and s...
Ross McFarlane, Irina V. Biktasheva
174
Voted
BMCBI
2006
195views more  BMCBI 2006»
15 years 4 months ago
Hubs of knowledge: using the functional link structure in Biozon to mine for biologically significant entities
Background: Existing biological databases support a variety of queries such as keyword or definition search. However, they do not provide any measure of relevance for the instance...
Paul Shafer, Timothy Isganitis, Golan Yona
BMCBI
2007
154views more  BMCBI 2007»
15 years 4 months ago
Inferring biological networks with output kernel trees
Background: Elucidating biological networks between proteins appears nowadays as one of the most important challenges in systems biology. Computational approaches to this problem ...
Pierre Geurts, Nizar Touleimat, Marie Dutreix, Flo...