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» Logic-Based Modeling in Systems Biology
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CMSB
2011
Springer
14 years 4 months ago
Coloured stochastic multilevel multiset rewriting
From the phosphorylation state of a molecule to the volume of a cell, parameters are ubiquitous in systems biology. At the same time, most models involve static or dynamic compart...
Nicolas Oury, Gordon D. Plotkin
DAC
2011
ACM
14 years 4 months ago
Synchronous sequential computation with molecular reactions
Just as electronic systems implement computation in terms of voltage (energy per unit charge), molecular systems compute in terms of chemical concentrations (molecules per unit vo...
Hua Jiang, Marc D. Riedel, Keshab K. Parhi
CDC
2009
IEEE
133views Control Systems» more  CDC 2009»
15 years 9 months ago
Equilibrium species counts and migration model tradeoffs for biogeography-based optimization
—Motivated by the migration mechanisms of ecosystems, various extensions to biogeography-based optimization (BBO) are proposed. BBO is an original optimization method based on th...
Haiping Ma, Suhong Ni, Man Sun
SIAMAM
2000
81views more  SIAMAM 2000»
15 years 4 months ago
Electrodiffusion Model of Rectangular Current Pulses in Ionic Channels of Cellular Membranes
A simplified electrodiffusion model for rectangular current pulses in ionic channels of biological membranes is presented. Numerical simulations and a dynamical systems analysis of...
Carl L. Gardner, Joseph W. Jerome, Robert S. Eisen...
AE
2001
Springer
15 years 8 months ago
Why Biologists and Computer Scientists Should Work Together
This is a time of increasing interdisciplinary research. Computer science is learning more from biology every day, enabling a plethora of new software techniques to flourish. And b...
Peter J. Bentley