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133
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DAM
2010
112views more  DAM 2010»
15 years 3 months ago
New results on optimizing rooted triplets consistency
Abstract. A set of phylogenetic trees with overlapping leaf sets is consistent if it can be merged without conflicts into a supertree. In this paper, we study the polynomial-time a...
Jaroslaw Byrka, Sylvain Guillemot, Jesper Jansson
134
Voted
BMCBI
2006
100views more  BMCBI 2006»
15 years 3 months ago
Using the nucleotide substitution rate matrix to detect horizontal gene transfer
Background: Horizontal gene transfer (HGT) has allowed bacteria to evolve many new capabilities. Because transferred genes perform many medically important functions, such as conf...
Micah Hamady, M. D. Betterton, Rob Knight
135
Voted
BMCBI
2006
156views more  BMCBI 2006»
15 years 3 months ago
Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments
Background: Molecular evolutionary studies of noncoding sequences rely on multiple alignments. Yet how multiple alignment accuracy varies across sequence types, tree topologies, d...
Daniel A. Pollard, Alan M. Moses, Venky N. Iyer, M...
136
Voted
BMCBI
2007
131views more  BMCBI 2007»
15 years 3 months ago
An improved method for identifying functionally linked proteins using phylogenetic profiles
Background: Phylogenetic profiles record the occurrence of homologs of genes across fully sequenced organisms. Proteins with similar profiles are typically components of protein c...
Shawn Cokus, Sayaka Mizutani, Matteo Pellegrini
191
Voted
ADHOCNOW
2009
Springer
15 years 1 months ago
A Decentralized Approach to Minimum-Energy Broadcasting in Static Ad Hoc Networks
Broadcasting is a commonly used feature in wireless networking, e.g. for file distribution, re-tasking, event notification, or miscellaneous maintenance. Due to the limited resourc...
Christopher Miller, Christian Poellabauer