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CPM
2009
Springer
189views Combinatorics» more  CPM 2009»
14 years 2 months ago
Average-Case Analysis of Perfect Sorting by Reversals
A sequence of reversals that takes a signed permutation to the identity is perfect if it preserves all common intervals between the permutation and the identity. The problem of com...
Mathilde Bouvel, Cedric Chauve, Marni Mishna, Domi...
JCT
2010
87views more  JCT 2010»
13 years 5 months ago
Bijections between pattern-avoiding fillings of Young diagrams
The pattern-avoiding fillings of Young diagrams we study arose from Postnikov’s work on positive Grassman cells. They are called Γ -diagrams, and are in bijection with decorate...
Matthieu Josuat-Vergès
BMCBI
2007
130views more  BMCBI 2007»
13 years 7 months ago
A robust measure of correlation between two genes on a microarray
Background: The underlying goal of microarray experiments is to identify gene expression patterns across different experimental conditions. Genes that are contained in a particula...
Johanna S. Hardin, Aya Mitani, Leanne Hicks, Brian...
JCB
2007
108views more  JCB 2007»
13 years 7 months ago
A Dynamic Programming Approach for Finding Common Patterns in RNAs
We developed a dynamic programming approach of computing common sequence structure patterns among two RNAs given their primary sequences and their secondary structures. Common pat...
Sven Siebert, Rolf Backofen
CORR
2011
Springer
155views Education» more  CORR 2011»
13 years 2 months ago
On the Zero-Error Capacity Threshold for Deletion Channels
—We consider the zero-error capacity of deletion channels. Specifically, we consider the setting where we choose a codebook C consisting of strings of n bits, and our model of t...
Ian A. Kash, Michael Mitzenmacher, Justin Thaler, ...