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    WABI
    2001
    Springer
    142views Bioinformatics» more  WABI 2001»
    Pattern Matching and Pattern Discovery Algorithms for Protein Topologies
    14 years 2 months ago
    Pattern Matching and Pattern Discovery Algorithms for Protein Topologies
    Download  www.brc.dcs.gla.ac.uk
    We describe algorithms for pattern matching and pattern learning in TOPS diagrams (formal descriptions of protein topologies). These problems can be reduced to checking for subgrap...
    Juris Viksna, David Gilbert
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    BMCBI
    2002
    108views more  BMCBI 2002»
    A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
    13 years 9 months ago
    A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
    Download  www.biomedcentral.com
    Background: Covariance models (CMs) are probabilistic models of RNA secondary structure, analogous to profile hidden Markov models of linear sequence. The dynamic programming algo...
    Sean R. Eddy
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    NAR
    2000
    84views more  NAR 2000»
    SRPDB (Signal Recognition Particle Database)
    13 years 9 months ago
    SRPDB (Signal Recognition Particle Database)
    Download  cmbi.bjmu.edu.cn
    The Signal Recognition Particle Database (SRPDB) at http://psyche.uthct.edu/dbs/SRPDB/SRPDB.html and http://bio.lundberg.gu.se/dbs/SRPDB/SRPDB. html assists in the better understa...
    Christian Zwieb, Tore Samuelsson
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    NAR
    2008
    115views more  NAR 2008»
    Data growth and its impact on the SCOP database: new developments
    13 years 9 months ago
    Data growth and its impact on the SCOP database: new developments
    Download  scop.mrc-lmb.cam.ac.uk
    The Structural Classification of Proteins (SCOP) database is a comprehensive ordering of all proteins of known structure, according to their evolutionary and structural relationsh...
    Antonina Andreeva, Dave Howorth, John-Marc Chandon...
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    BMCBI
    2008
    123views more  BMCBI 2008»
    A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences
    13 years 10 months ago
    A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences
    Download  www.biomedcentral.com
    Background: The structure of many eukaryotic cell regulatory proteins is highly modular. They are assembled from globular domains, segments of natively disordered polypeptides and...
    Claudia Chica, Alberto Labarga, Cathryn M. Gould, ...
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