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» MAP: Searching Large Genome Databases
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BMCBI
2007
124views more  BMCBI 2007»
13 years 8 months ago
Protein structural similarity search by Ramachandran codes
Background: Protein structural data has increased exponentially, such that fast and accurate tools are necessary to access structure similarity search. To improve the search speed...
Wei-Cheng Lo, Po-Jung Huang, Chih-Hung Chang, Ping...
BMCBI
2005
114views more  BMCBI 2005»
13 years 8 months ago
AutoFACT: An Automatic Functional Annotation and Classification Tool
Background: Assignment of function to new molecular sequence data is an essential step in genomics projects. The usual process involves similarity searches of a given sequence aga...
Liisa B. Koski, Michael W. Gray, B. Franz Lang, Ge...
NAR
2008
91views more  NAR 2008»
13 years 8 months ago
GenBank
GenBank (R) is a comprehensive sequence database that contains publicly available DNA sequences for more than 119 000 different organisms, obtained primarily through the submissio...
Dennis A. Benson, Ilene Karsch-Mizrachi, David J. ...
KDD
2007
ACM
211views Data Mining» more  KDD 2007»
14 years 9 months ago
Enhanced max margin learning on multimodal data mining in a multimedia database
The problem of multimodal data mining in a multimedia database can be addressed as a structured prediction problem where we learn the mapping from an input to the structured and i...
Zhen Guo, Zhongfei Zhang, Eric P. Xing, Christos F...
BMCBI
2010
129views more  BMCBI 2010»
13 years 8 months ago
Geoseq: a tool for dissecting deep-sequencing datasets
Background: Datasets generated on deep-sequencing platforms have been deposited in various public repositories such as the Gene Expression Omnibus (GEO), Sequence Read Archive (SR...
James Gurtowski, Anthony Cancio, Hardik Shah, Chay...