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BMCBI
2006
127views more  BMCBI 2006»
13 years 8 months ago
Automatic discovery of cross-family sequence features associated with protein function
Background: Methods for predicting protein function directly from amino acid sequences are useful tools in the study of uncharacterised protein families and in comparative genomic...
Markus Brameier, Josien Haan, Andrea Krings, Rober...
ECAI
2010
Springer
13 years 9 months ago
Nested Monte-Carlo Expression Discovery
Nested Monte-Carlo search is a general algorithm that gives good results in single player games. Genetic Programming evaluates and combines trees to discover expressions that maxim...
Tristan Cazenave
TREC
2003
13 years 9 months ago
Ranking Function Discovery by Genetic Programming for Robust Retrieval
Ranking functions are instrumental for the success of an information retrieval (search engine) system. However nearly all existing ranking functions are manually designed based on...
Li Wang, Weiguo Fan, Rui Yang, Wensi Xi, Ming Luo,...
WABI
2001
Springer
142views Bioinformatics» more  WABI 2001»
14 years 9 days ago
Pattern Matching and Pattern Discovery Algorithms for Protein Topologies
We describe algorithms for pattern matching and pattern learning in TOPS diagrams (formal descriptions of protein topologies). These problems can be reduced to checking for subgrap...
Juris Viksna, David Gilbert
RECOMB
2008
Springer
14 years 8 months ago
A Fast, Alignment-Free, Conservation-Based Method for Transcription Factor Binding Site Discovery
As an increasing number of eukaryotic genomes are being sequenced, comparative studies aimed at detecting regulatory elements in intergenic sequences are becoming more prevalent. M...
Raluca Gordân, Leelavati Narlikar, Alexander...