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2000
13 years 9 months ago
Analysis of Gene Expression Microarrays for Phenotype Classification
Several microarray technologies that monitor the level of expression of a large number of genes have recently emerged. Given DNA-microarray data for a set of cells characterized b...
Andrea Califano, Gustavo Stolovitzky, Yuhai Tu
BMCBI
2007
147views more  BMCBI 2007»
13 years 8 months ago
Statistical analysis and significance testing of serial analysis of gene expression data using a Poisson mixture model
Background: Serial analysis of gene expression (SAGE) is used to obtain quantitative snapshots of the transcriptome. These profiles are count-based and are assumed to follow a Bin...
Scott D. Zuyderduyn
BMCBI
2010
127views more  BMCBI 2010»
13 years 8 months ago
Deriving enzymatic and taxonomic signatures of metagenomes from short read data
Background: We propose a method for deriving enzymatic signatures from short read metagenomic data of unknown species. The short read data are converted to six pseudo-peptide cand...
Uri Weingart, Erez Persi, Uri Gophna, David Horn
BMCBI
2004
114views more  BMCBI 2004»
13 years 7 months ago
Extending the mutual information measure to rank inferred literature relationships
Background: Within the peer-reviewed literature, associations between two things are not always recognized until commonalities between them become apparent. These commonalities ca...
Jonathan D. Wren
NCA
2002
IEEE
13 years 7 months ago
Comparison of Algorithmic and Machine Learning Approaches for the Automatic Fitting of Gaussian Peaks
Fitting gaussian peaks to experimental data is important in many disciplines, including nuclear spectroscopy. Nonlinear least squares fitting methods have been in use for a long t...
Radwan E. Abdel-Aal