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BMCBI
2010
154views more  BMCBI 2010»
13 years 7 months ago
Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data
Background: A major goal of molecular biology is determining the mechanisms that control the transcription of genes. Motif Enrichment Analysis (MEA) seeks to determine which DNA-b...
Robert C. McLeay, Timothy L. Bailey
BMCBI
2006
153views more  BMCBI 2006»
13 years 7 months ago
Automatic document classification of biological literature
Background: Document classification is a wide-spread problem with many applications, from organizing search engine snippets to spam filtering. We previously described Textpresso, ...
David Chen, Hans-Michael Müller, Paul W. Ster...
SIGMETRICS
2008
ACM
181views Hardware» more  SIGMETRICS 2008»
13 years 7 months ago
Counter braids: a novel counter architecture for per-flow measurement
Fine-grained network measurement requires routers and switches to update large arrays of counters at very high link speed (e.g. 40 Gbps). A naive algorithm needs an infeasible amo...
Yi Lu, Andrea Montanari, Balaji Prabhakar, Sarang ...
SIGPLAN
2002
13 years 7 months ago
Write barrier removal by static analysis
We present a new analysis for removing unnecessary write barriers in programs that use generational garbage collection. To our knowledge, this is the first static program analysis...
Karen Zee, Martin C. Rinard
CIKM
2010
Springer
13 years 6 months ago
FacetCube: a framework of incorporating prior knowledge into non-negative tensor factorization
Non-negative tensor factorization (NTF) is a relatively new technique that has been successfully used to extract significant characteristics from polyadic data, such as data in s...
Yun Chi, Shenghuo Zhu