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APBC
2004
122views Bioinformatics» more  APBC 2004»
13 years 11 months ago
Integrating Biopathway Databases for Large-scale Modeling and Simulation
Biopathway databases have been developed, such as KEGG and EcoCyc, that compile interaction structures of biopathways together with biological annotations. However, these biopathw...
Masao Nagasaki, Atsushi Doi, Hiroshi Matsuno, Sato...
DGO
2003
115views Education» more  DGO 2003»
13 years 11 months ago
Free-link Topology Navigation on Statistical Table Objects: Metadata Schema and User Interface
A table object, defined and described in XML, is treated as the basic unit in a free-link topology that enables multiple inheritances for each node. In this paper, a novel table n...
Xiangming Mu, Gary Marchionini
ICDE
2010
IEEE
212views Database» more  ICDE 2010»
14 years 9 months ago
ViewJoin: Efficient View-based Evaluation of Tree Pattern Queries
A fundamental problem in XML query processing is tree pattern query (TPQ) matching which computes all data instances in an XML database that match an input TPQ. There is a lot of r...
Ding Chen, Chee-Yong Chan
EDBTW
2010
Springer
14 years 4 months ago
Biochemical network matching and composition
Graph composition has applications in a variety of practical applications. In drug development, for instance, in order to understand possible drug interactions, one has to merge k...
Martin Hugh Goodfellow, John Wilson, Ela Hunt
WSC
2007
14 years 8 days ago
From domain ontologies to modeling ontologies to executable simulation models
Ontologies allow researchers, domain experts, and software agents to share a common understanding of the concepts and relationships of a domain. The past few years have seen the p...
Gregory A. Silver, Osama Al-Haj Hassan, John A. Mi...