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BMCBI
2010
100views more  BMCBI 2010»
13 years 7 months ago
MapMi: automated mapping of microRNA loci
Background: A large effort to discover microRNAs (miRNAs) has been under way. Currently miRBase is their primary repository, providing annotations of primary sequences, precursors...
José Afonso Guerra-Assunção, ...
BMCBI
2005
125views more  BMCBI 2005»
13 years 7 months ago
Multiple sequence alignments of partially coding nucleic acid sequences
Background: High quality sequence alignments of RNA and DNA sequences are an important prerequisite for the comparative analysis of genomic sequence data. Nucleic acid sequences, ...
Roman R. Stocsits, Ivo L. Hofacker, Claudia Fried,...
TMRA
2005
Springer
14 years 1 months ago
TMRAP - Topic Maps Remote Access Protocol
Abstract. This paper describes TMRAP, an abstract web service interface for remote access to topic maps. It can be used to access a topic map repository to query or update a topic ...
Lars Marius Garshol
SOFTVIS
2006
ACM
14 years 1 months ago
Evolutionary layout: preserving the mental map during the development of class models
It is vital for any developer to keep track of changes during his project. Thus, it is common practice to take static snapshots of single class diagrams. But to preserve the menta...
Susanne Jucknath-John, Dennis Graf, Gabriele Taent...
BMCBI
2011
12 years 11 months ago
A Novel And Well-Defined Benchmarking Method For Second Generation Read Mapping
Background: Second generation sequencing technologies yield DNA sequence data at ultra high-throughput. Common to most biological applications is a mapping of the reads to an almo...
Manuel Holtgrewe, Anne-Katrin Emde, David Weese, K...