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» Mapping sequences by parts
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ALMOB
2006
110views more  ALMOB 2006»
13 years 7 months ago
Computing distribution of scale independent motifs in biological sequences
The use of Chaos Game Representation (CGR) or its generalization, Universal Sequence Maps (USM), to describe the distribution of biological sequences has been found objectionable ...
Jonas S. Almeida, Susana Vinga
BMCBI
2010
118views more  BMCBI 2010»
13 years 7 months ago
Bacillus anthracis genome organization in light of whole transcriptome sequencing
Emerging knowledge of whole prokaryotic transcriptomes could validate a number of theoretical concepts introduced in the early days of genomics. What are the rules connecting gene...
Jeffrey Martin, Wenhan Zhu, Karla D. Passalacqua, ...
SOFTWARE
2002
13 years 7 months ago
Temporal Probabilistic Concepts from Heterogeneous Data Sequences
We consider the problem of characterisation of sequences of heterogeneous symbolic data that arise from a common underlying temporal pattern. The data, which are subject to impreci...
Sally I. McClean, Bryan W. Scotney, Fiona Palmer
CORR
2007
Springer
74views Education» more  CORR 2007»
13 years 7 months ago
Periodicity of certain piecewise affine planar maps
We determine periodic and aperiodic points of certain piecewise affine maps in the Euclidean plane. Using these maps, we prove for λ ∈ { ±1± √ 5 2 , ± √ 2, ± √ 3} that...
Shigeki Akiyama, Horst Brunotte, Attila Pethö...
BMCBI
2007
99views more  BMCBI 2007»
13 years 7 months ago
Flexible mapping of homology onto structure with Homolmapper
Background: Over the past decade, a number of tools have emerged for the examination of homology relationships among protein sequences in a structural context. Most recent softwar...
Nathan C. Rockwell, J. Clark Lagarias