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BMCBI
2011
13 years 5 days ago
Efficient alignment of pyrosequencing reads for re-sequencing applications
Background: Over the past few years, new massively parallel DNA sequencing technologies have emerged. These platforms generate massive amounts of data per run, greatly reducing th...
Francisco Fernandes, Paulo G. S. da Fonseca, Lu&ia...
BMCBI
2011
13 years 5 days ago
PeakRanger: A cloud-enabled peak caller for ChIP-seq data
Background: Chromatin immunoprecipitation (ChIP), coupled with massively parallel short-read sequencing (seq) is used to probe chromatin dynamics. Although there are many algorith...
Xin Feng, Robert Grossman, Lincoln Stein
CGF
2011
13 years 4 days ago
GeoBrush: Interactive Mesh Geometry Cloning
We propose a method for interactive cloning of 3D surface geometry using a paintbrush interface, similar to the continuous cloning brush popular in image editing. Existing interac...
Kenshi Takayama, Ryan Schmidt, Karan Singh, Takeo ...
COMPGEOM
2011
ACM
13 years 4 days ago
Persistence-based clustering in riemannian manifolds
We present a clustering scheme that combines a mode-seeking phase with a cluster merging phase in the corresponding density map. While mode detection is done by a standard graph-b...
Frédéric Chazal, Leonidas J. Guibas,...
IWMM
2011
Springer
270views Hardware» more  IWMM 2011»
12 years 11 months ago
Memory management in NUMA multicore systems: trapped between cache contention and interconnect overhead
Multiprocessors based on processors with multiple cores usually include a non-uniform memory architecture (NUMA); even current 2-processor systems with 8 cores exhibit non-uniform...
Zoltan Majo, Thomas R. Gross