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CIBCB
2007
IEEE
14 years 4 months ago
Modeling protein-DNA binding time in Stochastic Discrete Event Simulation of Biological Processes
Abstract— This paper presents a parametric model to estimate the DNA-protein binding time using the DNA and protein structures and details of the binding site. To understand the ...
Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. ...
ATAL
2003
Springer
14 years 3 months ago
A multi-agent system for the quantitative simulation of biological networks
We apply the multi-agent system (MAS) platform to the task of biological network simulation. In this paper, we describe the simulation of signal transduction (ST) networks using t...
Salim Khan, Ravi Makkena, Foster McGeary, Keith S....
FLAIRS
2004
13 years 11 months ago
Simulating Biological Motion Perception Using a Recurrent Neural Network
People have the ability to perceive biological motion under conditions of severely limited visual information. If the information is in the form of a point-light motion sequence o...
Roxanne L. Canosa
LSGRID
2004
Springer
14 years 3 months ago
Distributed Cell Biology Simulations with E-Cell System
Many useful applications of simulation in computational cell biology, e.g. kinetic parameter estimation, Metabolic Control Analysis (MCA), and bifurcation analysis, require a large...
Masahiro Sugimoto, Kouichi Takahashi, Tomoya Kitay...
CSB
2005
IEEE
130views Bioinformatics» more  CSB 2005»
14 years 3 months ago
iSimBioSys: An "In Silico" Discrete Event Simulation Framework for Modeling Biological Systems
The genome projects have provided comprehensive information about the basic building blocks of life. The next challenge is to understand how biological functions emerge from compl...
Samik Ghosh, Preetam Ghosh, Kalyan Basu, Sajal K. ...