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» Massively Parallel Solutions for Molecular Sequence Analysis
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BMCBI
2004
134views more  BMCBI 2004»
13 years 10 months ago
Bayesian model accounting for within-class biological variability in Serial Analysis of Gene Expression (SAGE)
Background: An important challenge for transcript counting methods such as Serial Analysis of Gene Expression (SAGE), "Digital Northern" or Massively Parallel Signature ...
Ricardo Z. N. Vêncio, Helena Brentani, Diogo...
PARA
1998
Springer
14 years 2 months ago
Technologies for Teracomputing: A European Option
Abstract. Ahardware and software environment with performance above 1 Tera ops (teracomputing) is presently required to face the leading computational challenges not only in fundam...
Agostino Mathis
BMCBI
2007
166views more  BMCBI 2007»
13 years 10 months ago
Data handling strategies for high throughput pyrosequencers
Background: New high throughput pyrosequencers such as the 454 Life Sciences GS 20 are capable of massively parallelizing DNA sequencing providing an unprecedented rate of output ...
Gabriele A. Trombetti, Raoul J. P. Bonnal, Ermanno...
ALMOB
2006
113views more  ALMOB 2006»
13 years 10 months ago
Inverse bifurcation analysis: application to simple gene systems
Background: Bifurcation analysis has proven to be a powerful method for understanding the qualitative behavior of gene regulatory networks. In addition to the more traditional for...
James Lu, Heinz W. Engl, Peter Schuster
HPDC
2010
IEEE
13 years 11 months ago
Modeling sequence and function similarity between proteins for protein functional annotation
A common task in biological research is to predict function for proteins by comparing sequences between proteins of known and unknown function. This is often done using pair-wise ...
Roger Higdon, Brenton Louie, Eugene Kolker