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» Massively-Parallel Simulation of Biochemical Systems
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ENTCS
2010
119views more  ENTCS 2010»
13 years 7 months ago
Bio-PEPA for Epidemiological Models
Many models have been defined in order to describe the evolution of a disease in a population. The modelling of diseases is helpful to understand the mechanisms for their spread a...
Federica Ciocchetta, Jane Hillston
SAC
2009
ACM
14 years 1 months ago
Modular implementation of adaptive decisions in stochastic simulations
We present a modular approach to implement adaptive decisions with existing scientific codes. Using a sophisticated system software tool based on the function call interception t...
Pilsung Kang 0002, Yang Cao, Naren Ramakrishnan, C...
BMCBI
2010
126views more  BMCBI 2010»
13 years 7 months ago
Simulation of a Petri net-based Model of the Terpenoid Biosynthesis Pathway
Background: The development and simulation of dynamic models of terpenoid biosynthesis has yielded a systems perspective that provides new insights into how the structure of this ...
Aliah Hazmah Hawari, Zeti-Azura Mohamed-Hussein
CORR
2010
Springer
174views Education» more  CORR 2010»
13 years 7 months ago
Hybrid Numerical Solution of the Chemical Master Equation
We present a numerical approximation technique for the analysis of continuous-time Markov chains that describe networks of biochemical reactions and play an important role in the ...
Thomas A. Henzinger, Maria Mateescu, Linar Mikeev,...
DAGSTUHL
2006
13 years 8 months ago
Modeling and Simulating Biological Processes with Stochastic Multiset Rewriting
ed Abstract Membrane systems are models of computation inspired by the structure and the function of biological cells. The model was introduced in 1998 by Gh. Paun and since then m...
Matteo Cavaliere, Sean Sedwards