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WABI
2005
Springer
109views Bioinformatics» more  WABI 2005»
14 years 1 months ago
Optimal Protein Threading by Cost-Splitting
Abstract. In this paper, we use integer programming approach for solving a hard combinatorial optimization problem, namely protein threading. For this sequence-to-structure alignme...
Philippe Veber, Nicola Yanev, Rumen Andonov, Vince...
ESA
1999
Springer
110views Algorithms» more  ESA 1999»
13 years 12 months ago
Geometric Searching over the Rationals
We revisit classical geometric search problems under the assumption of rational coordinates. Our main result is a tight bound for point separation, ie, to determine whether n given...
Bernard Chazelle
DM
2010
89views more  DM 2010»
13 years 7 months ago
Polynomial-time dualization of r-exact hypergraphs with applications in geometry
Let H 2V be a hypergraph on vertex set V . For a positive integer r, we call H r-exact, if any minimal transversal of H intersects any hyperedge of H in at most r vertices. This ...
Khaled M. Elbassioni, Imran Rauf
ECCC
2007
96views more  ECCC 2007»
13 years 7 months ago
Linear programming bounds for codes via a covering argument
We recover the first linear programming bound of McEliece, Rodemich, Rumsey, and Welch for binary error-correcting codes and designs via a covering argument. It is possible to sh...
Michael Navon, Alex Samorodnitsky
MP
2010
150views more  MP 2010»
13 years 2 months ago
The algebraic degree of semidefinite programming
Given a generic semidefinite program, specified by matrices with rational entries, each coordinate of its optimal solution is an algebraic number. We study the degree of the minima...
Jiawang Nie, Kristian Ranestad, Bernd Sturmfels