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DATE
2009
IEEE
159views Hardware» more  DATE 2009»
14 years 4 months ago
Design and implementation of a database filter for BLAST acceleration
— BLAST is a very popular Computational Biology algorithm. Since it is computationally expensive it is a natural target for acceleration research, and many reconfigurable archite...
Panagiotis Afratis, Constantinos Galanakis, Euripi...
XSYM
2009
Springer
139views Database» more  XSYM 2009»
14 years 4 months ago
A Data Parallel Algorithm for XML DOM Parsing
Abstract. The extensible markup language XML has become the de facto standard for information representation and interchange on the Internet. XML parsing is a core operation perfor...
Bhavik Shah, Praveen Rao, Bongki Moon, Mohan Rajag...
WEBI
2007
Springer
14 years 4 months ago
Concordance-Based Entity-Oriented Search
— We consider the problem of finding the relevant named entities in response to a search query over a given text corpus. Entity search can readily be used to augment conventiona...
Mikhail Bautin, Steven Skiena
WILF
2007
Springer
170views Fuzzy Logic» more  WILF 2007»
14 years 4 months ago
Time-Series Alignment by Non-negative Multiple Generalized Canonical Correlation Analysis
Background: Quantitative analysis of differential protein expressions requires to align temporal elution measurements from liquid chromatography coupled to mass spectrometry (LC/M...
Bernd Fischer, Volker Roth, Joachim M. Buhmann
CSB
2005
IEEE
137views Bioinformatics» more  CSB 2005»
14 years 3 months ago
A Learned Comparative Expression Measure for Affymetrix GeneChip DNA Microarrays
Perhaps the most common question that a microarray study can ask is, “Between two given biological conditions, which genes exhibit changed expression levels?” Existing methods...
Will Sheffler, Eli Upfal, John Sedivy, William Sta...