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AI
2010
Springer
13 years 7 months ago
Logic-based ontology comparison and module extraction, with an application to DL-Lite
We develop a formal framework for comparing different versions of ontologies, and apply it to ontologies formulated in terms of DL-Lite, a family of `lightweight' description...
Roman Kontchakov, Frank Wolter, Michael Zakharyasc...
BMCBI
2010
154views more  BMCBI 2010»
13 years 7 months ago
Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data
Background: A major goal of molecular biology is determining the mechanisms that control the transcription of genes. Motif Enrichment Analysis (MEA) seeks to determine which DNA-b...
Robert C. McLeay, Timothy L. Bailey
BMCBI
2007
161views more  BMCBI 2007»
13 years 7 months ago
Efficient classification of complete parameter regions based on semidefinite programming
Background: Current approaches to parameter estimation are often inappropriate or inconvenient for the modelling of complex biological systems. For systems described by nonlinear ...
Lars Kuepfer, Uwe Sauer, Pablo A. Parrilo
BMCBI
2010
122views more  BMCBI 2010»
13 years 7 months ago
Genome3D: A viewer-model framework for integrating and visualizing multi-scale epigenomic information within a three-dimensional
Background: New technologies are enabling the measurement of many types of genomic and epigenomic information at scales ranging from the atomic to nuclear. Much of this new data i...
Thomas M. Asbury, Matt Mitman, Jijun Tang, W. Jim ...
CORR
2008
Springer
158views Education» more  CORR 2008»
13 years 7 months ago
Declarative Combinatorics: Isomorphisms, Hylomorphisms and Hereditarily Finite Data Types in Haskell
This paper is an exploration in a functional programming framework of isomorphisms between elementary data types (natural numbers, sets, finite functions, permutations binary deci...
Paul Tarau