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BMCBI
2006
127views more  BMCBI 2006»
13 years 8 months ago
Construction of phylogenetic trees by kernel-based comparative analysis of metabolic networks
Background: To infer the tree of life requires knowledge of the common characteristics of each species descended from a common ancestor as the measuring criteria and a method to c...
Sok June Oh, Je-Gun Joung, Jeong Ho Chang, Byoung-...
FOCS
2008
IEEE
14 years 3 months ago
Dynamic Connectivity: Connecting to Networks and Geometry
Dynamic connectivity is a well-studied problem, but so far the most compelling progress has been confined to the edge-update model: maintain an understanding of connectivity in a...
Timothy M. Chan, Mihai Patrascu, Liam Roditty
RECOMB
2006
Springer
14 years 9 months ago
A Parameterized Algorithm for Protein Structure Alignment
This paper proposes a parameterized algorithm for aligning two protein structures, in the case where one protein structure is represented by a contact map graph and the other by a ...
Jinbo Xu, Feng Jiao, Bonnie Berger
SDM
2009
SIAM
157views Data Mining» more  SDM 2009»
14 years 5 months ago
MUSK: Uniform Sampling of k Maximal Patterns.
Recent research in frequent pattern mining (FPM) has shifted from obtaining the complete set of frequent patterns to generating only a representative (summary) subset of frequent ...
Mohammad Al Hasan, Mohammed Javeed Zaki
ISAAC
2007
Springer
158views Algorithms» more  ISAAC 2007»
14 years 2 months ago
On the Expressive Power of Planar Perfect Matching and Permanents of Bounded Treewidth Matrices
Valiant introduced some 25 years ago an algebraic model of computation along with the complexity classes VP and VNP, which can be viewed as analogues of the classical classes P and...
Uffe Flarup, Pascal Koiran, Laurent Lyaudet