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BMCBI
2008
106views more  BMCBI 2008»
13 years 9 months ago
Searching for evolutionary distant RNA homologs within genomic sequences using partition function posterior probabilities
Background: Identification of RNA homologs within genomic stretches is difficult when pairwise sequence identity is low or unalignable flanking residues are present. In both cases...
Usman Roshan, Satish Chikkagoudar, Dennis R. Lives...
CORR
2010
Springer
120views Education» more  CORR 2010»
13 years 9 months ago
How Much Multiuser Diversity is Required for Energy Limited Multiuser Systems?
Multiuser diversity (MUDiv) is one of the central concepts in multiuser (MU) systems. In particular, MUDiv allows for scheduling among users in order to eliminate the negative effe...
Youngwook Ko, Sergiy A. Vorobyov, Masoud Ardakani
CORR
2010
Springer
172views Education» more  CORR 2010»
13 years 9 months ago
Seeing Through Black Boxes : Tracking Transactions through Queues under Monitoring Resource Constraints
The problem of optimal allocation of monitoring resources for tracking transactions progressing through a distributed system, modeled as a queueing network, is considered. Two for...
Animashree Anandkumar, Ting He, Chatschik Bisdikia...
BMCBI
2006
95views more  BMCBI 2006»
13 years 9 months ago
XcisClique: analysis of regulatory bicliques
Background: Modeling of cis-elements or regulatory motifs in promoter (upstream) regions of genes is a challenging computational problem. In this work, set of regulatory motifs si...
Amrita Pati, Cecilia Vasquez-Robinet, Lenwood S. H...
BMCBI
2007
105views more  BMCBI 2007»
13 years 9 months ago
Finding regulatory elements and regulatory motifs: a general probabilistic framework
Over the last two decades a large number of algorithms has been developed for regulatory motif finding. Here we show how many of these algorithms, especially those that model bind...
Erik van Nimwegen